Journal: Scientific Reports

Article Title: RIFS: a randomly restarted incremental feature selection algorithm

doi: 10.1038/s41598-017-13259-6

Figure Lengend Snippet: The classification performances of RIFS on the 17 transcriptome datasets. The measurement mAcc is used as the vertical axis, and the horizontal axis lists the 17 datasets. The detailed mAcc values are also given on the top of each column.

Article Snippet: Six transcriptome datasets, i.e . DLBCL , Pros , ALL , CNS , Lym and Adeno , were publicly available at the Broad Institute Genome Data Analysis Center.

Techniques:

Journal: Frontiers in Physiology

Article Title: Long-term stimulation with alternating electric fields modulates the differentiation and mineralization of human pre-osteoblasts

doi: 10.3389/fphys.2022.965181

Figure Lengend Snippet: Results of the transcriptome analysis. (A) Heatmap of all genes with higher/lower fold change value than 1/-1 (log2), compared between unstimulated control cells and HEF stimulated cells after 7 and 28 days. (B) Heatmap of top 10 genes with highest and lowest fold changes (log2) each day. (C) Pathways influenced by the electric stimulation. Each node (circle) represents a distinct molecular or biological function, and edges (green lines) represent the number of overlapping genes, determined using a similarity coefficient . Yellow and orange circles represent upregulated molecular or biological functions after 7 (yellow) and 28 days (orange) of HEF stimulation, respectively. Green and blue circles represent downregulated molecular or biological functions after 7 (green) and 28 days (blue) of HEF stimulation, respectively.

Article Snippet: In the transcriptome analysis data set provided by ATLAS Biolabs, the signal intensity of more than 55,335 annotated probe sets, hence RNA transcripts were determined.

Techniques: Control